Parsing Data

Kaliappan, Snehalatha ; IIT Bombay


Outline: Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence contained in the file and length of the sequence. Use read function ( to read contents from a data file with a single record. Pre-requisite: Manipulating Sequences

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Spoken Tutorial IIT Bombay

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