Parsing Data

By
Kaliappan, Snehalatha ; IIT Bombay
(2015-08-15)

Video

Outline: Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence contained in the file and length of the sequence. Use read function (Bio.SeqIO.read()) to read contents from a data file with a single record. Pre-requisite: Manipulating Sequences

Published by:

Spoken Tutorial IIT Bombay

DOER Persistent Identifier: http://doer.col.org/handle/123456789/8316