Now showing items 1-10 of 12
Jmol - Measurements and Labeling
(Spoken Tutorial IIT Bombay, 2014)
Outline: Create a model of Carboxylic acid: Example, Acetic acid; Create a model of Nitroalkane: Example, Nitroetane; Label atoms in a model with symbol of the element; Label atoms in a model with number; Label ...
Jmol - Create and Edit Molecular Models
(Spoken Tutorial IIT Bombay, 2013-11-15)
Outline: Substitute the hydrogen in molecular model with a functional group; Add and delete bonds; Add and delete atoms; Pop-up-menu (Contextual menu). Pre-requisite: Jmol - Introduction to Jmol Application
Jmol - Structures from Database
(Spoken Tutorial IIT Bombay, 2014-04-02)
Outline: Load chemical structures from chemical structure database (PubChem); Load structure of Phenol and convert it to Para-amino Phenol; Load structure of cholesterol and highlight the double-bond and side-chain; ...
Jmol - Animation using Script Commands
(Spoken Tutorial IIT Bombay, 2015-08-03)
Outline: Jmol animation using script commands; Demonstration of animation using ethane and hemoglobin as examples; Script commands with keywords, move, delay, slab, loop and capture; Save the animation as ...
Jmol - Proteins and Macromolecules
(Spoken Tutorial IIT Bombay, 2014-04-14)
Outline: Load structures of proteins from Protein Data Bank (PDB); Download .pdb files from the database; View the 3D structure of Insulin using PDB code ...
Jmol - Symmetry and Point Groups
(Spoken Tutorial IIT Bombay, 2015-01-22)
Outline: 1. Draw lines (C2 and C3 rotational axes) through atoms in methane molecule; 2. Spin and rotate the molecule along the axis; 3. Draw reflection plane through atoms in methane molecule; 4. Demonstration ...
Jmol - Surfaces and Orbitals
(Spoken Tutorial IIT Bombay, 2014-03-15)
Outline: Create models of alicyclic molecules. Example: Cyclohexane; Create models of aromatic molecules. Example: Benzene; Display Surface topology of molecules. Example: Molecular surface and Dot surface; Create ...
Jmol - Crystal Structure and Unit Cell
(Spoken Tutorial IIT Bombay, 2015-04-14)
Outline: * Download CIF (Crystallographic Information File) from Crystallography Open Database (COD); * Open CIF files in Jmol; * Display unit cell and unit cell parameters on Jmol panel; * Display crystal ...
Jmol - Introduction to Jmol Application
(Spoken Tutorial IIT Bombay, 2013-11-01)
Outline: Brief description about Jmol Application: Software requirements; Prerequisites; Open the Jmol Application on Ubuntu/ Linux system; Explain program interface (Menu Bar, Tool bar, Pop-up menu and display ...
Jmol - Script Console and Script Commands
(Spoken Tutorial IIT Bombay, 2014-03-06)
Outline: About Script Commands; How to write Script commands; How to use Script console; Change display of propane by using script commands; Change the color of atoms and bonds; Change the size of bonds and ...