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  • Jmol - Animation using Script Commands 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2015-08-03)
    Outline: Jmol animation using script commands; Demonstration of animation using ethane and hemoglobin as examples; Script commands with keywords, move, delay, slab, loop and capture; Save the animation as ...

  • Jmol - Symmetry and Point Groups 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2015-01-22)
    Outline: 1. Draw lines (C2 and C3 rotational axes) through atoms in methane molecule; 2. Spin and rotate the molecule along the axis; 3. Draw reflection plane through atoms in methane molecule; 4. Demonstration ...

  • Jmol - 3D Models of Enzymes 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2014-12-30)
    Outline: Load structure of Hexokinase using PDB code; Modify the display of secondary structure; Highlight amino acid residues at the active site; Highlight the substrate; Highlight the cofactors; View Ramachandran ...

  • Jmol - Proteins and Macromolecules 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2014-04-14)
    Outline: Load structures of proteins from Protein Data Bank (PDB); Download .pdb files from the database; View the 3D structure of Insulin using PDB code ...

  • Jmol - Crystal Structure and Unit Cell 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2015-04-14)
    Outline: * Download CIF (Crystallographic Information File) from Crystallography Open Database (COD); * Open CIF files in Jmol; * Display unit cell and unit cell parameters on Jmol panel; * Display crystal ...

  • Jmol - Structures from Database 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2014-04-02)
    Outline: Load chemical structures from chemical structure database (PubChem); Load structure of Phenol and convert it to Para-amino Phenol; Load structure of cholesterol and highlight the double-bond and side-chain; ...

  • Jmol - Surfaces and Orbitals 

    Kaliappan, Snehalatha; Gadgil, Saurabh (Spoken Tutorial IIT Bombay, 2014-03-15)
    Outline: Create models of alicyclic molecules. Example: Cyclohexane; Create models of aromatic molecules. Example: Benzene; Display Surface topology of molecules. Example: Molecular surface and Dot surface; Create ...

  • Jmol - Script Console and Script Commands 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2014-03-06)
    Outline: About Script Commands; How to write Script commands; How to use Script console; Change display of propane by using script commands; Change the color of atoms and bonds; Change the size of bonds and ...

  • Jmol - Measurements and Labeling 

    Kaliappan, Snehalatha; Anbalagan, Arthi (Spoken Tutorial IIT Bombay, 2014)
    Outline: Create a model of Carboxylic acid: Example, Acetic acid; Create a model of Nitroalkane: Example, Nitroetane; Label atoms in a model with symbol of the element; Label atoms in a model with number; Label ...

  • Jmol - Modify Display and View 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2013-12-05)
    Outline: Rotate, zoom, move and spin the model; Modify the view; Change the style of the display; Change the size and color of atoms and bonds; Axes and bound box; Save the image in various ...

  • Jmol - Create and Edit Molecular Models 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2013-11-15)
    Outline: Substitute the hydrogen in molecular model with a functional group; Add and delete bonds; Add and delete atoms; Pop-up-menu (Contextual menu). Pre-requisite: Jmol - Introduction to Jmol Application

  • Jmol - Introduction to Jmol Application 

    Kaliappan, Snehalatha (Spoken Tutorial IIT Bombay, 2013-11-01)
    Outline: Brief description about Jmol Application: Software requirements; Prerequisites; Open the Jmol Application on Ubuntu/ Linux system; Explain program interface (Menu Bar, Tool bar, Pop-up menu and display ...

  • Properties of JChemPaint 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2015-01-01)
    Outline: Explain Periodic table trends; Explain Atom Pop up Menu; How to draw a reaction; How to set up an R-Group query. Pre-requisite: Features of JChemPaint

  • Features of JChemPaint 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2014-09-23)
    Outline: Change background color of the "Panel"; Change look and feel of the window; Change User interface language; Insert different "Templates" to the "Panel"; Generate "SMILES" and "InChi Key" for a drawn ...

  • Introduction to JChemPaint 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2014-08-18)
    Outline: About JChemPaint; Install JChemPaint on Windows OS; Install JChemPaint on Ubuntu linux OS; Explain JChemPaint interface; Explain Menu bar, Tool bars and Panel. Explain about Preferences window; Draw ...

  • GeoGebra 5.04 - Types of Symmetry 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2018-06-10)
    Outline: Definition of symmetry; Definition of line of symmetry; Reflect an object about a line; Change properties of an object; Reflect an object about a point; Reflect an object a circle; Definition of ...

  • GeoGebra 5.04 - Properties of Quadrilaterals 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2018-06-16)
    Outline: Construct a parallelogram using parallel lines; Convert a parallelogram to a rectangle; Delete mistakenly drawn points; Construct a kite using intersecting circles; Explain the properties of a kite; ...

  • GeoGebra 5.04 - Congruency of Triangles 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2018-07-18)
    Outline: Define congruency of triangles; Construct and prove Side Side Side rule of congruency; Construct and prove Angle Side Angle rule of congruency; construct and prove Side Angle Side rule of congruency. ...

  • GeoGebra 5.04 - Basics of Triangles 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2018-06-22)
    Outline: Increase the font size using the Options menu; Draw a triangle; Measure the angles of the triangle; Display area and perimeter on the triangle; Show that sum of the interior angles is 180 degrees; Show ...

  • GeoGebra 5.04 - Introduction 

    Ganapathi, Madhuri (Spoken Tutorial IIT Bombay, 2018-06-06)
    Outline: About GeoGebra interface; Menu bar and Geometric tools; Open GeoGebra interface in Ubuntu Linux and windows 10 OS; How to delete objects; Enable and disable grid and axes; Algebra and Graphics views; ...

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