Now showing items 1-10 of 10
UCSF Chimera - Attributes
(Spoken Tutorial IIT Bombay, 2016-07-28)
Outline: Change attributes of atoms, residues and models. Color atoms in a protein according to B-factor values. Color residues according to kdHydrophobicity values. Pre-requisite: UCSF Chimera - Superimposing ...
(Spoken Tutorial IIT Bombay, 2016-03-28)
Outline: * Prepare input files for computational chemistry programmes such as: GAMESS, Gaussian, MOPAC, NWChem etc.; * View Molecular orbitals and calculated IR spectrum using output files generated from GAMESS ...
UCSF Chimera - Writing Commands
(Spoken Tutorial IIT Bombay, 2016-02-11)
Outline: Type commands to: Change the display to atoms. Show and hide ribbons. Change the color of the amino acid residues. Label individual residues. Remove solvent molecules. Save the image in different ...
UCSF Chimera - Axes and Planes
(Spoken Tutorial IIT Bombay, 2016-10-24)
Outline: Show Axes, Planes and Centroids for structure of Green Fluorescent Protein. Show 2D-Labels. Draw Arrows. Clip a model of Myoglobin using Per-Model clipping tool. Pre-requisite: UCSF Chimera - Animation
UCSF Chimera - Build Structures
(Spoken Tutorial IIT Bombay, 2016-08-05)
Outline: Create structures of small molecules, peptides and DNA fragments. Modify structure (add and delete atoms). Minimize energy. Join models. Pre-requisite: UCSF Chimera - Surface Properties
UCSF Chimera - Surface Properties
(Spoken Tutorial IIT Bombay, 2016-03-05)
Outline: Show surfaces for protein and DNA structures. Create images of protein surface colored by : (i) Amino acid hydrophobicity; (ii) Electrostatic Potential; Create high quality images for publication ...
UCSF Chimera - Picking and Selection
(Spoken Tutorial IIT Bombay, 2016-01-05)
Outline: Show labels for atoms and residues. Select atoms and residues using Select menu or by Picking. Change the color and display of the residues. Add, delete or change atoms. Rotate bonds. Open more than ...
UCSF Chimera - Superimposing and Morphing
(Spoken Tutorial IIT Bombay, 2016-05-15)
Outline: Superimpose and compare different structures of the same protein. Morph conformations and create a trajectory. Pre-requisite: UCSF Chimera - Structure Analysis
UCSF Chimera - Animation
(Spoken Tutorial IIT Bombay, 2016-09-20)
Outline: Adjust background lighting and effects. Create scenes for animation. Place scenes along a timeline. Record a movie of the resulting. animation. Pre-requisite: UCSF Chimera - Attributes
UCSF Chimera - Structure Analysis
(Spoken Tutorial IIT Bombay, 2016-05-05)
Outline: Measure distance between atoms in the structure. Show hydrogen bonds. Identify non-polar interactions. Rotate bonds in the residues to get different rotamers. Pre-requisite: UCSF Chimera - Surface Properties