Now showing items 1-10 of 10
(Spoken Tutorial IIT Bombay, 2015-07-15)
Outline: 1. Generate a random DNA sequence. 2. Slice the DNA sequence at specified locations. 3. Join the two sequences together to form a new sequence (concatenate). 4. Find the length of the sequence. ...
(Spoken Tutorial IIT Bombay, 2015-09-25)
Outline: Run BLAST for the query sequence over internet through NCBI BLAST service. Use qblast function in NCBIWWW module to run blast for a nucleotide sequence. Save the output xml file in home folder. Parse the ...
(Spoken Tutorial IIT Bombay, 2015-08-15)
Outline: Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence ...
Introduction to Biopython
(Spoken Tutorial IIT Bombay, 2015-05-15)
Outline: Important features of Biopython. Information regarding download and installation on Linux Operating System. Create a sequence object for the given DNA strand. Transcription of the DNA sequence to mRNA. ...
Writing Sequence Files
(Spoken Tutorial IIT Bombay, 2015-09-20)
Outline: Create Sequence Record Objects. Write sequence files using write function of Sequence Input/Output module( Bio.SeqIO. write()). Convert between file formats. Sort records in a file by length. Pre-requisite: ...
(Spoken Tutorial IIT Bombay, 2015-12-17)
Outline: Import Molecules from chemical database; Rotate the molecules; Zoom in and zoom out the structures; Build molecules on the Panel using Draw tool; Set up force field and optimize the geometry using ...
(Spoken Tutorial IIT Bombay, 2015-12-22)
Outline: Add and delete atoms; Add and delete bonds; Rotate bonds and change length of the bond; Change hydrogen to methyl group; Copy, paste and join structures. Pre-requisite: Build molecules
Single Board Heater System - Accessing SBHS through Scilab on Windows
(Spoken Tutorial IIT Bombay, 2015-03-07)
Outline: Download relevant SBHS Scilab code; Identify SBHS COM port number; Configure Scilab serial toolbox; Handle errors; Perform steptest experiment; Reset SBHS. Pre-requisite: Single Board Heater System ...
UCSF Chimera - Structure Manipulation
(Spoken Tutorial IIT Bombay, 2015-11-24)
Outline: Open a structure on the Chimera window. Download pdb files from PDB database. Move, rotate and zoom the structure. Scale and clip the structure. Change the display using menus in the menu bar. Remove ...
Scilab - Digital Signal Processing
(Spoken Tutorial IIT Bombay, 2015-05-19)
Outline: Plotting continuous and discrete sine waves. Plotting step function. Plotting ramp function. Pre-requisite: Scilab - Plotting 2D graphs