Now showing items 1-5 of 5
(Spoken Tutorial IIT Bombay, 2015-07-15)
Outline: 1. Generate a random DNA sequence. 2. Slice the DNA sequence at specified locations. 3. Join the two sequences together to form a new sequence (concatenate). 4. Find the length of the sequence. ...
(Spoken Tutorial IIT Bombay, 2015-09-25)
Outline: Run BLAST for the query sequence over internet through NCBI BLAST service. Use qblast function in NCBIWWW module to run blast for a nucleotide sequence. Save the output xml file in home folder. Parse the ...
(Spoken Tutorial IIT Bombay, 2015-08-15)
Outline: Download FASTA and GenBank files from NCBI database website. Parse data files using functions in Bio.SeqIO module. Use parse function (Bio.SeqIO. Parse()) to extract information such as sequence id's, sequence ...
Introduction to Biopython
(Spoken Tutorial IIT Bombay, 2015-05-15)
Outline: Important features of Biopython. Information regarding download and installation on Linux Operating System. Create a sequence object for the given DNA strand. Transcription of the DNA sequence to mRNA. ...
Writing Sequence Files
(Spoken Tutorial IIT Bombay, 2015-09-20)
Outline: Create Sequence Record Objects. Write sequence files using write function of Sequence Input/Output module( Bio.SeqIO. write()). Convert between file formats. Sort records in a file by length. Pre-requisite: ...